{
  "_id": "6a22a094cd65a98ecbd58684",
  "Package": "platetools",
  "Title": "Tools and Plots for Multi-Well Plates",
  "Version": "0.1.6",
  "Authors@R": "person(\"Scott\", \"Warchal\", email = \"scott.warchal@gmail.com\", role = c(\"aut\", \"cre\"))",
  "Description": "Collection of functions for working with multi-well\nmicrotitre plates, mainly 96, 384 and 1536 well plates.",
  "License": "MIT + file LICENSE",
  "URL": "https://github.com/swarchal/platetools",
  "BugReports": "https://github.com/swarchal/platetools/issues",
  "Encoding": "UTF-8",
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  "Repository": "https://swarchal.r-universe.dev",
  "Date/Publication": "2024-03-07 16:15:25 UTC",
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  "Author": "Scott Warchal [aut, cre]",
  "Maintainer": "Scott Warchal <scott.warchal@gmail.com>",
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    "b_score",
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    "dist_map",
    "fill_plate",
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    "hit_map",
    "legend_title",
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    "missing_wells",
    "num_to_well",
    "pc_grid",
    "pc_map",
    "pchit_grid",
    "pchit_map",
    "plate_effect",
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    "plate_map_grid",
    "plate_map_grid_scale",
    "plate_map_scale",
    "plate_matrix",
    "plt12",
    "plt1536",
    "plt24",
    "plt384",
    "plt48",
    "plt6",
    "plt96",
    "raw_grid",
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    "read_map",
    "rotate_plate",
    "set_block",
    "well_to_num",
    "z_grid",
    "z_map"
  ],
  "_datasets": [
    {
      "name": "readmap_data",
      "title": "example data in a plate map form",
      "object": "readmap_data",
      "class": [
        "data.frame"
      ],
      "fields": [
        "V1",
        "V2",
        "V3",
        "V4",
        "V5",
        "V6",
        "V7",
        "V8",
        "V9",
        "V10",
        "V11",
        "V12"
      ],
      "rows": 8,
      "table": true,
      "tojson": true
    }
  ],
  "_help": [
    {
      "page": "b_grid",
      "title": "Plots multiple b-scored normalised platemaps",
      "topics": [
        "b_grid"
      ]
    },
    {
      "page": "b_map",
      "title": "Plots a heatmap of b-score normalised values in a plate layout",
      "topics": [
        "b_map"
      ]
    },
    {
      "page": "b_score",
      "title": "2 way median polish",
      "topics": [
        "b_score"
      ]
    },
    {
      "page": "bhit_map",
      "title": "Platemap to identify 'hits' following a B-score normalisation",
      "topics": [
        "bhit_map"
      ]
    },
    {
      "page": "check_plate_input",
      "title": "checks plate input for dodgy well plate combinations",
      "topics": [
        "check_plate_input"
      ]
    },
    {
      "page": "dist_map",
      "title": "Plots distributions per well in a plate layout",
      "topics": [
        "dist_map"
      ]
    },
    {
      "page": "fill_plate",
      "title": "Fill in missing wells",
      "topics": [
        "fill_plate"
      ]
    },
    {
      "page": "hit_grid",
      "title": "Plots multiple platemaps with and identifies hits",
      "topics": [
        "hit_grid"
      ]
    },
    {
      "page": "hit_map",
      "title": "Platemap to identify 'hits' in a screen",
      "topics": [
        "hit_map"
      ]
    },
    {
      "page": "is_1536",
      "title": "internal 1536 plate function for plate_map",
      "topics": [
        "is_1536"
      ]
    },
    {
      "page": "is_old_ggplot",
      "title": "check ggplot2 version",
      "topics": [
        "is_old_ggplot"
      ]
    },
    {
      "page": "legend_title",
      "title": "change legend title",
      "topics": [
        "legend_title"
      ]
    },
    {
      "page": "list_to_dataframe",
      "title": "Converts list to a dataframe in a sensible way",
      "topics": [
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      ]
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      "title": "2-way median smooth",
      "topics": [
        "med_smooth"
      ]
    },
    {
      "page": "missing_wells",
      "title": "Returns wells that are missing from a complete plate",
      "topics": [
        "missing_wells"
      ]
    },
    {
      "page": "num_to_well",
      "title": "Converts numbers to well labels",
      "topics": [
        "num_to_well"
      ]
    },
    {
      "page": "pc_grid",
      "title": "Plots multiple platemaps as a heatmap of the first principal component.",
      "topics": [
        "pc_grid"
      ]
    },
    {
      "page": "pc_map",
      "title": "Principal component heatmap in a plate layout",
      "topics": [
        "pc_map"
      ]
    },
    {
      "page": "pchit_grid",
      "title": "Plots multiple heatmaps identifying hits from the first principal component",
      "topics": [
        "pchit_grid"
      ]
    },
    {
      "page": "pchit_map",
      "title": "Plots a heatmap identifying hits from the first principal component",
      "topics": [
        "pchit_map"
      ]
    },
    {
      "page": "plate_effect",
      "title": "Two way-median smooth on a plate map",
      "topics": [
        "plate_effect"
      ]
    },
    {
      "page": "plate_map",
      "title": "creates dataframe of row,column,data from wellID and data",
      "topics": [
        "plate_map"
      ]
    },
    {
      "page": "plate_map_grid",
      "title": "creates dataframe of row, column, plate_id from data regarding wellIDs",
      "topics": [
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      ]
    },
    {
      "page": "plate_map_grid_scale",
      "title": "creates dataframe of row, column, plate_id from data regarding wellIDs",
      "topics": [
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      ]
    },
    {
      "page": "plate_map_multiple",
      "title": "row, column for multiple features",
      "topics": [
        "plate_map_multiple"
      ]
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    {
      "page": "plate_map_scale",
      "title": "creates dataframe of row, column, and scaled data from well IDs",
      "topics": [
        "plate_map_scale"
      ]
    },
    {
      "page": "plate_matrix",
      "title": "plate layout matrix from well IDs",
      "topics": [
        "plate_matrix"
      ]
    },
    {
      "page": "plt12",
      "title": "ggplot plate object",
      "topics": [
        "plt12"
      ]
    },
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      "page": "plt1536",
      "title": "ggplot plate object",
      "topics": [
        "plt1536"
      ]
    },
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      "page": "plt24",
      "title": "ggplot plate object",
      "topics": [
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    },
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      "page": "plt384",
      "title": "ggplot plate object",
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      "title": "ggplot plate object",
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      "page": "plt6",
      "title": "ggplot plate object",
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      ]
    },
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      "title": "ggplot plate object",
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    },
    {
      "page": "raw_grid",
      "title": "Plots multiple platemaps with heatmap of raw values",
      "topics": [
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    {
      "page": "raw_map",
      "title": "Plots a platemap with heatmap of raw values",
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    {
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      "title": "example data in a plate map form",
      "topics": [
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      "page": "z_grid",
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